Running make '-j' 'FFLAGS_DOUBLE=-fdefault-real-8 -fdefault-double-8' 'CFLAGS_DOUBLE=-DDOUBLE_PRECISION' 'LD_MPI=' 'CFLAGS_FFTW3=' 'FFLAGS_FFTW3=' 'LD_FFTW3=' 'CFLAGS_FFTW2=' 'FFLAGS_FFTW2=' 'LD_FFTW2=' 'FC=mpif90' 'F77=mpif77' 'FFLAGS=-O -fno-underscoring -O0 -Wall -finit-real=sNaN -finit-integer=-2147483648 -g -fbacktrace -fimplicit-none -fcheck=all -ffpe-trap=invalid,zero,overflow' 'LDFLAGS_HELPER=-dynamic' 'OMPFFLAGS=-fopenmp' 'OMPLFLAGS=-lgomp' 'PPFLAGS=-cpp' 'FSTD_95=-std=f95' 'FSTD_2003=-std=f2003' 'MODULE_PREFIX=__' 'MODULE_INFIX=_MOD_' 'MODULE_SUFFIX=' 'CC=mpicc' 'CFLAGS=-DFUNDERSC=0' 'default_to_be'
MAKING src/Makefile.inc
touch src/.build-history
echo "@"`hostname` "("`date`")" >> src/.build-history
( cd src && \
echo "===== " make FROM_PARENT=src/ -f Makefile.src code "====="; \
make FROM_PARENT=src/ -f Makefile.src default_to_be \
)
===== make FROM_PARENT=src/ -f Makefile.src code =====
make[1]: Entering directory '/home/pencil/normal/samples/2d-tests/cylinder_ogrid_thermo_chem/src'
Compiler: gfortran
GCC version: 13
Makefile.src:2907: GCC version > 9 ==> allowing argument mismatch in mpicomm.f90, particles_mpicomm.f90, syscalls.f90 and fftpack.f90.
scripts/mkcparam -b noascalar.f90 noborder_profiles.f90 chemistry_simple.f90 nochiral.f90 nocosmicray.f90 nocosmicrayflux.f90 density.f90 deriv.f90 nodetonate.f90 nodustdensity.f90 nodustvelocity.f90 temperature_ionization.f90 eos_chemistry_simple.f90 nofixed_point.f90 noforcing.f90 nogravity.f90 nogpu.f90 grid.f90 noheatflux.f90 hydro.f90 nohyperresi_strict.f90 nohypervisc_strict.f90 noimplicit_diffusion.f90 noimplicit_physics.f90 noinitial_condition.f90 nointerstellar.f90 nolorenz_gauge.f90 nomagnetic.f90 magnetic/nomeanfield.f90 magnetic/nomeanfield_demfdt.f90 mpicomm.f90 noneutraldensity.f90 noneutralvelocity.f90 NSCBC.f90 noopacity.f90 particles_dust.f90 noparticles_adaptation.f90 noparticles_coagulation.f90 noparticles_condensation.f90 noparticles_collisions.f90 particles_map.f90 noparticles_density.f90 noparticles_mass.f90 noparticles_number.f90 particles_radius.f90 noparticles_potential.f90 noparticles_grad.f90 noparticles_selfgravity.f90 noparticles_sink.f90 noparticles_drag.f90 noparticles_spin.f90 noparticles_stalker.f90 noparticles_lyapunov.f90 noparticles_caustics.f90 noparticles_tetrad.f90 noparticles_stirring.f90 noparticles_diagnos_dv.f90 noparticles_diagnos_state.f90 noparticles_persistence.f90 noparticles_temperature.f90 noparticles_adsorbed.f90 noparticles_surfspec.f90 noparticles_chemistry.f90 nopointmasses.f90 nopoisson.f90 nopolymer.f90 nopower_spectrum.f90 nopython.f90 nopscalar.f90 noradiation.f90 noselfgravity.f90 noSGS_hydro.f90 noshear.f90 noshock.f90 nosignal_handling.f90 solid_cells_ogrid.f90 nostreamlines.f90 notestfield.f90 notestflow.f90 notestscalar.f90 notimeavg.f90 notraining.f90 viscosity.f90 cparam.local nospecial.f90
### ¡¡¡WARNING!!! ###: cp multiply declared: in chemistry_simple.f90 eos_chemistry_simple.f90
### ¡¡¡WARNING!!! ###: nu multiply declared: in chemistry_simple.f90 viscosity.f90
### ¡¡¡WARNING!!! ###: gradnu multiply declared: in chemistry_simple.f90 viscosity.f90
${PENCIL_HOME}/utils/pc_identify_revision --reset
make -f Makefile.src start.o run.o start.x run.x
make[2]: Entering directory '/home/pencil/normal/samples/2d-tests/cylinder_ogrid_thermo_chem/src'
Compiler: gfortran
GCC version: 13
Makefile.src:2907: GCC version > 9 ==> allowing argument mismatch in mpicomm.f90, particles_mpicomm.f90, syscalls.f90 and fftpack.f90.
scripts/mkcparam -b noascalar.f90 noborder_profiles.f90 chemistry_simple.f90 nochiral.f90 nocosmicray.f90 nocosmicrayflux.f90 density.f90 deriv.f90 nodetonate.f90 nodustdensity.f90 nodustvelocity.f90 temperature_ionization.f90 eos_chemistry_simple.f90 nofixed_point.f90 noforcing.f90 nogravity.f90 nogpu.f90 grid.f90 noheatflux.f90 hydro.f90 nohyperresi_strict.f90 nohypervisc_strict.f90 noimplicit_diffusion.f90 noimplicit_physics.f90 noinitial_condition.f90 nointerstellar.f90 nolorenz_gauge.f90 nomagnetic.f90 magnetic/nomeanfield.f90 magnetic/nomeanfield_demfdt.f90 mpicomm.f90 noneutraldensity.f90 noneutralvelocity.f90 NSCBC.f90 noopacity.f90 particles_dust.f90 noparticles_adaptation.f90 noparticles_coagulation.f90 noparticles_condensation.f90 noparticles_collisions.f90 particles_map.f90 noparticles_density.f90 noparticles_mass.f90 noparticles_number.f90 particles_radius.f90 noparticles_potential.f90 noparticles_grad.f90 noparticles_selfgravity.f90 noparticles_sink.f90 noparticles_drag.f90 noparticles_spin.f90 noparticles_stalker.f90 noparticles_lyapunov.f90 noparticles_caustics.f90 noparticles_tetrad.f90 noparticles_stirring.f90 noparticles_diagnos_dv.f90 noparticles_diagnos_state.f90 noparticles_persistence.f90 noparticles_temperature.f90 noparticles_adsorbed.f90 noparticles_surfspec.f90 noparticles_chemistry.f90 nopointmasses.f90 nopoisson.f90 nopolymer.f90 nopower_spectrum.f90 nopython.f90 nopscalar.f90 noradiation.f90 noselfgravity.f90 noSGS_hydro.f90 noshear.f90 noshock.f90 nosignal_handling.f90 solid_cells_ogrid.f90 nostreamlines.f90 notestfield.f90 notestflow.f90 notestscalar.f90 notimeavg.f90 notraining.f90 viscosity.f90 cparam.local nospecial.f90
scripts/mkcparam -b noascalar.f90 noborder_profiles.f90 chemistry_simple.f90 nochiral.f90 nocosmicray.f90 nocosmicrayflux.f90 density.f90 deriv.f90 nodetonate.f90 nodustdensity.f90 nodustvelocity.f90 temperature_ionization.f90 eos_chemistry_simple.f90 nofixed_point.f90 noforcing.f90 nogravity.f90 nogpu.f90 grid.f90 noheatflux.f90 hydro.f90 nohyperresi_strict.f90 nohypervisc_strict.f90 noimplicit_diffusion.f90 noimplicit_physics.f90 noinitial_condition.f90 nointerstellar.f90 nolorenz_gauge.f90 nomagnetic.f90 magnetic/nomeanfield.f90 magnetic/nomeanfield_demfdt.f90 mpicomm.f90 noneutraldensity.f90 noneutralvelocity.f90 NSCBC.f90 noopacity.f90 particles_dust.f90 noparticles_adaptation.f90 noparticles_coagulation.f90 noparticles_condensation.f90 noparticles_collisions.f90 particles_map.f90 noparticles_density.f90 noparticles_mass.f90 noparticles_number.f90 particles_radius.f90 noparticles_potential.f90 noparticles_grad.f90 noparticles_selfgravity.f90 noparticles_sink.f90 noparticles_drag.f90 noparticles_spin.f90 noparticles_stalker.f90 noparticles_lyapunov.f90 noparticles_caustics.f90 noparticles_tetrad.f90 noparticles_stirring.f90 noparticles_diagnos_dv.f90 noparticles_diagnos_state.f90 noparticles_persistence.f90 noparticles_temperature.f90 noparticles_adsorbed.f90 noparticles_surfspec.f90 noparticles_chemistry.f90 nopointmasses.f90 nopoisson.f90 nopolymer.f90 nopower_spectrum.f90 nopython.f90 nopscalar.f90 noradiation.f90 noselfgravity.f90 noSGS_hydro.f90 noshear.f90 noshock.f90 nosignal_handling.f90 solid_cells_ogrid.f90 nostreamlines.f90 notestfield.f90 notestflow.f90 notestscalar.f90 notimeavg.f90 notraining.f90 viscosity.f90 cparam.local nospecial.f90
### ¡¡¡WARNING!!! ###: gradnu multiply declared: in chemistry_simple.f90 viscosity.f90
### ¡¡¡WARNING!!! ###: cp multiply declared: in chemistry_simple.f90 eos_chemistry_simple.f90
### ¡¡¡WARNING!!! ###: nu multiply declared: in chemistry_simple.f90 viscosity.f90
### ¡¡¡WARNING!!! ###: nu multiply declared: in chemistry_simple.f90 viscosity.f90
### ¡¡¡WARNING!!! ###: cp multiply declared: in chemistry_simple.f90 eos_chemistry_simple.f90
### ¡¡¡WARNING!!! ###: gradnu multiply declared: in chemistry_simple.f90 viscosity.f90
mpif90 -O -fno-underscoring -O0 -Wall -finit-real=sNaN -finit-integer=-2147483648 -g -fbacktrace -fimplicit-none -fcheck=all -ffpe-trap=invalid,zero,overflow -fdefault-real-8 -fdefault-double-8 -std=f2003 -o run.o -c run.f90
make[2]: 'start.x' is up to date.
run.f90:606:6:
606 | use Farray_alloc
| 1
Warning: Array ‘f’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
run.f90:652:27:
652 | integer :: helper_core_id
| 1
Warning: Unused variable ‘helper_core_id’ declared at (1) [-Wunused-variable]
run.f90:650:14:
650 | integer :: i,j
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
run.f90:650:16:
650 | integer :: i,j
| 1
Warning: Unused variable ‘j’ declared at (1) [-Wunused-variable]
run.f90:651:27:
651 | integer :: master_core_id
| 1
Warning: Unused variable ‘master_core_id’ declared at (1) [-Wunused-variable]
run.f90:639:25:
639 | type (pencil_case) :: p
| 1
Warning: Array ‘p’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
run.f90:603:6:
603 | use Diagnostics, only: phiavg_norm, report_undefined_diagnostics, trim_averages,diagnostics_clean_up
| 1
Warning: Unused module variable ‘phiavg_norm’ which has been explicitly imported at (1) [-Wunused-variable]
run.f90:653:58:
653 | integer, dimension(max_threads_possible) :: tmp_core_ids
| 1
Warning: Unused variable ‘tmp_core_ids’ declared at (1) [-Wunused-variable]
run.f90:195:31:
195 | integer :: isave_shift=0, i
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
mpif90 cparam.o cdata.o mpicomm.o noborder_profiles.o boundcond.o nodebug.o debug_io_dist.o deriv.o diagnostics.o nofarray_alloc.o farray.o filter.o nofixed_point.o nofourier.o general.o geometrical_types.o ghost_check.o ghostfold_mpicomm.o grid.o nogsl.o noimplicit_diffusion.o initcond.o noinitial_condition.o nohdf5_io.o io_dist.o file_io_f95.o nolsode_for_chemistry.o messages.o NSCBC.o param_io.o persist.o nopower_spectrum.o nopython.o register.o shared_variables.o nosignal_handling.o slices.o slices_methods.o snapshot.o solid_cells_ogrid_mpicomm.o solid_cells_ogrid.o solid_cells_ogrid_cdata.o solid_cells_ogrid_chemistry.o solid_cells_ogrid_sub.o nostreamlines.o nostruct_func.o sub.o syscalls.o syscalls_ansi.o notestperturb.o notimeavg.o noweno_transport.o noyinyang.o noyinyang_mpi.o magnetic.a particles_main.a morton_helper.o chemistry_simple.o nochiral.o nocosmicray.o nocosmicrayflux.o density.o density_methods.o nodetonate.o nodustdensity.o nodustvelocity.o temperature_ionization.o eos_chemistry_simple.o noforcing.o nogravity.o noheatflux.o hydro.o nohyperresi_strict.o nohypervisc_strict.o noimplicit_physics.o nointerstellar.o nolorenz_gauge.o noneutraldensity.o noneutralvelocity.o noopacity.o nopointmasses.o nopoisson.o nopolymer.o nopscalar.o noradiation.o noselfgravity.o noSGS_hydro.o noshear.o noshock.o nospecial.o noascalar.o notestfield.o notestflow.o notestscalar.o viscosity.o nogpu.o timestep.o notraining.o equ.o pencil_check.o run.o -ldl -o run.x
make[2]: Leaving directory '/home/pencil/normal/samples/2d-tests/cylinder_ogrid_thermo_chem/src'
${PENCIL_HOME}/utils/pc_identify_revision --write
make[1]: Leaving directory '/home/pencil/normal/samples/2d-tests/cylinder_ogrid_thermo_chem/src'