Found config file Running make '-j' 'FFLAGS_DOUBLE=-fdefault-real-8 -fdefault-double-8' 'CFLAGS_DOUBLE=-DDOUBLE_PRECISION' 'LD_MPI=' 'CFLAGS_FFTW3=' 'FFLAGS_FFTW3=' 'LD_FFTW3=' 'CFLAGS_FFTW2=' 'FFLAGS_FFTW2=' 'LD_FFTW2=' 'FFLAGS=-O0 -Wall -finit-real=sNaN -finit-integer=-2147483648 -g -fbacktrace -fimplicit-none -fcheck=all -ffpe-trap=invalid,zero,overflow -finit-real=NaN' 'FC=/home/wdobler/gcc-6.4.0/bin/gfortran -I/usr/include/mpi -I/home/wdobler/gcc-6.4.0/include -L/home/wdobler/gcc-6.4.0/lib -L/home/wdobler/gcc-6.4.0/libexec -I/usr/lib/openmpi/include -pthread -I/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl' 'F77=$(FC)' 'CC=/home/wdobler/gcc-6.4.0/bin/gcc -I/usr/include/mpi -I/home/wdobler/gcc-6.4.0/include -L/home/wdobler/gcc-6.4.0/lib -L/home/wdobler/gcc-6.4.0/libexec -ldl' 'CFLAGS=-DFUNDERSC=1' 'LDFLAGS=-L/home/wdobler/gcc-6.4.0/lib' 'LDFLAGS_HELPER=-dynamic' 'FSTD_95=-std=f95' 'FSTD_2003=-std=f2003' 'LDMPI=-I/usr/lib/openmpi/include -pthread -I/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl' 'OMPLFLAGS=-L/usr/share/doc/' 'default_to_be' MAKING src/Makefile.inc touch src/.build-history echo "@"`hostname` "("`date`")" >> src/.build-history ( cd src && \ echo "===== " make FROM_PARENT=src/ -f Makefile.src code "====="; \ make FROM_PARENT=src/ -f Makefile.src default_to_be \ ) ===== make FROM_PARENT=src/ -f Makefile.src code ===== Compiler: gfortran GCC version: 6.4.0 make[1]: Entering directory `/home/brandenb/pencil-hourly-tests/samples/2d-tests/cylinder_deposition/src' Makefile.src:3416: warning: overriding commands for target `nompicomm.o' Makefile.src:3155: warning: ignoring old commands for target `nompicomm.o' scripts/mkcparam -b noascalar.f90 noborder_profiles.f90 nochemistry.f90 nochiral.f90 nocosmicray.f90 nocosmicrayflux.f90 density.f90 deriv.f90 nodetonate.f90 nodustdensity.f90 nodustvelocity.f90 noentropy.f90 eos_idealgas.f90 nofixed_point.f90 noforcing.f90 nogravity.f90 nogpu.f90 grid.f90 noheatflux.f90 hydro.f90 nohyperresi_strict.f90 nohypervisc_strict.f90 noimplicit_diffusion.f90 noimplicit_physics.f90 noinitial_condition.f90 nointerstellar.f90 nolorenz_gauge.f90 nomagnetic.f90 magnetic/nomeanfield.f90 magnetic/nomeanfield_demfdt.f90 nompicomm.f90 noneutraldensity.f90 noneutralvelocity.f90 NSCBC.f90 noopacity.f90 particles_dust.f90 noparticles_adaptation.f90 noparticles_coagulation.f90 noparticles_condensation.f90 noparticles_collisions.f90 particles_map.f90 noparticles_density.f90 noparticles_mass.f90 noparticles_number.f90 particles_radius.f90 noparticles_potential.f90 noparticles_grad.f90 noparticles_selfgravity.f90 noparticles_sink.f90 noparticles_drag.f90 noparticles_spin.f90 particles_stalker.f90 noparticles_lyapunov.f90 noparticles_caustics.f90 noparticles_tetrad.f90 noparticles_stirring.f90 noparticles_diagnos_dv.f90 noparticles_diagnos_state.f90 noparticles_persistence.f90 noparticles_temperature.f90 noparticles_adsorbed.f90 noparticles_surfspec.f90 noparticles_chemistry.f90 nopointmasses.f90 nopoisson.f90 nopolymer.f90 nopower_spectrum.f90 nopython.f90 nopscalar.f90 noradiation.f90 noselfgravity.f90 noSGS_hydro.f90 noshear.f90 noshock.f90 nosignal_handling.f90 solid_cells.f90 nostreamlines.f90 notestfield.f90 notestflow.f90 notestscalar.f90 notimeavg.f90 notraining.f90 viscosity.f90 cparam.local nospecial.f90 ${PENCIL_HOME}/utils/pc_identify_revision --reset make -f Makefile.src start.o run.o start.x run.x Compiler: gfortran GCC version: 6.4.0 make[2]: Entering directory `/home/brandenb/pencil-hourly-tests/samples/2d-tests/cylinder_deposition/src' Makefile.src:3416: warning: overriding commands for target `nompicomm.o' Makefile.src:3155: warning: ignoring old commands for target `nompicomm.o' scripts/mkcparam -b noascalar.f90 noborder_profiles.f90 nochemistry.f90 nochiral.f90 nocosmicray.f90 nocosmicrayflux.f90 density.f90 deriv.f90 nodetonate.f90 nodustdensity.f90 nodustvelocity.f90 noentropy.f90 eos_idealgas.f90 nofixed_point.f90 noforcing.f90 nogravity.f90 nogpu.f90 grid.f90 noheatflux.f90 hydro.f90 nohyperresi_strict.f90 nohypervisc_strict.f90 noimplicit_diffusion.f90 noimplicit_physics.f90 noinitial_condition.f90 nointerstellar.f90 nolorenz_gauge.f90 nomagnetic.f90 magnetic/nomeanfield.f90 magnetic/nomeanfield_demfdt.f90 nompicomm.f90 noneutraldensity.f90 noneutralvelocity.f90 NSCBC.f90 noopacity.f90 particles_dust.f90 noparticles_adaptation.f90 noparticles_coagulation.f90 noparticles_condensation.f90 noparticles_collisions.f90 particles_map.f90 noparticles_density.f90 noparticles_mass.f90 noparticles_number.f90 particles_radius.f90 noparticles_potential.f90 noparticles_grad.f90 noparticles_selfgravity.f90 noparticles_sink.f90 noparticles_drag.f90 noparticles_spin.f90 particles_stalker.f90 noparticles_lyapunov.f90 noparticles_caustics.f90 noparticles_tetrad.f90 noparticles_stirring.f90 noparticles_diagnos_dv.f90 noparticles_diagnos_state.f90 noparticles_persistence.f90 noparticles_temperature.f90 noparticles_adsorbed.f90 noparticles_surfspec.f90 noparticles_chemistry.f90 nopointmasses.f90 nopoisson.f90 nopolymer.f90 nopower_spectrum.f90 nopython.f90 nopscalar.f90 noradiation.f90 noselfgravity.f90 noSGS_hydro.f90 noshear.f90 noshock.f90 nosignal_handling.f90 solid_cells.f90 nostreamlines.f90 notestfield.f90 notestflow.f90 notestscalar.f90 notimeavg.f90 notraining.f90 viscosity.f90 cparam.local nospecial.f90 scripts/mkcparam -b noascalar.f90 noborder_profiles.f90 nochemistry.f90 nochiral.f90 nocosmicray.f90 nocosmicrayflux.f90 density.f90 deriv.f90 nodetonate.f90 nodustdensity.f90 nodustvelocity.f90 noentropy.f90 eos_idealgas.f90 nofixed_point.f90 noforcing.f90 nogravity.f90 nogpu.f90 grid.f90 noheatflux.f90 hydro.f90 nohyperresi_strict.f90 nohypervisc_strict.f90 noimplicit_diffusion.f90 noimplicit_physics.f90 noinitial_condition.f90 nointerstellar.f90 nolorenz_gauge.f90 nomagnetic.f90 magnetic/nomeanfield.f90 magnetic/nomeanfield_demfdt.f90 nompicomm.f90 noneutraldensity.f90 noneutralvelocity.f90 NSCBC.f90 noopacity.f90 particles_dust.f90 noparticles_adaptation.f90 noparticles_coagulation.f90 noparticles_condensation.f90 noparticles_collisions.f90 particles_map.f90 noparticles_density.f90 noparticles_mass.f90 noparticles_number.f90 particles_radius.f90 noparticles_potential.f90 noparticles_grad.f90 noparticles_selfgravity.f90 noparticles_sink.f90 noparticles_drag.f90 noparticles_spin.f90 particles_stalker.f90 noparticles_lyapunov.f90 noparticles_caustics.f90 noparticles_tetrad.f90 noparticles_stirring.f90 noparticles_diagnos_dv.f90 noparticles_diagnos_state.f90 noparticles_persistence.f90 noparticles_temperature.f90 noparticles_adsorbed.f90 noparticles_surfspec.f90 noparticles_chemistry.f90 nopointmasses.f90 nopoisson.f90 nopolymer.f90 nopower_spectrum.f90 nopython.f90 nopscalar.f90 noradiation.f90 noselfgravity.f90 noSGS_hydro.f90 noshear.f90 noshock.f90 nosignal_handling.f90 solid_cells.f90 nostreamlines.f90 notestfield.f90 notestflow.f90 notestscalar.f90 notimeavg.f90 notraining.f90 viscosity.f90 cparam.local nospecial.f90 make[2]: `run.o' is up to date. make[2]: `start.x' is up to date. make[2]: `run.x' is up to date. make[2]: Leaving directory `/home/brandenb/pencil-hourly-tests/samples/2d-tests/cylinder_deposition/src' ${PENCIL_HOME}/utils/pc_identify_revision --write make[1]: Leaving directory `/home/brandenb/pencil-hourly-tests/samples/2d-tests/cylinder_deposition/src'